PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13694g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 660aa    MW: 74346.1 Da    PI: 6.6272
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13694g00021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71e-1457133190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCk.aklkvkkekdgkwevtklele 84 
                               +f+++YA++vGF++ + + ++ k +g i++ ++ Cs+e  r+++ ++              C+ a+l++++++++ w+v+k++++
  Niben101Scf13694g00021.1  57 NFFDAYARRVGFTIHVGQYNRAKPDGPIISWDYSCSREVVRRKNIES--------------CNaAMLRIERKNSESWVVAKFVED 127
                               69***************************************998877..............7625779***************** PP

                      FAR1  85 HnHela 90 
                               HnH+++
  Niben101Scf13694g00021.1 128 HNHSIV 133
                               ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1157133IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.399341377IPR007527Zinc finger, SWIM-type
PfamPF044346.5E-11341375IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-8352379IPR006564Zinc finger, PMZ-type
PROSITE profilePS5096610.682382420IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-10389418IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-8395422IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
RAEEAKKTGE IAAELIHNSK QGLPENFTER DAIVEVDDGE EKPYVGMEFQ TEEAAKNFFD  60
AYARRVGFTI HVGQYNRAKP DGPIISWDYS CSREVVRRKN IESCNAAMLR IERKNSESWV  120
VAKFVEDHNH SIVNPSKVHY LQPRKHFSGA SKTVGVTPGA PTVIMVPVDG NHVSVSSNEG  180
FKDACPVESN LSWASILDRY DLRKNEWLQA VYNARNQWAP VYFRDTFFAA LPSNRSVTFF  240
FDGYVNQQTT LPMFFKQYER ALESSLEREI QSDFDTNCTT PMLKTPSPME QQASNLYTKK  300
VFAKFQEELV ETFAYTANKI DGDERLSKFR VAKYEQDDKA YSVMLNLEEM KASCSCHMFE  360
YSGILCRHIL TVFTVTNFRP IIYLXVMLNL GEMKASCSCH MFEYSGILCR HILTVFTVTN  420
VLTVPSHYIL RRWTKNAKVG QGSEEDIVKQ GINSLSSRFN HLCLEALRYA EEGAVSVETY  480
DAAISALREG LSKISIVAKN IVRPPSSQGS GSTQDESLKR TLATSDTAPF LWPWQDTVPH  540
QFNLNDVDLP AGDLNQPTMT PVAINRDGGL ADNVVVYSCF KSMTWVIENT TPASKVAVIN  600
LKLQDYGKSP AGETEVQFRV TKVTLEPMLK SMGYISQQLS LPANRVAVIN LKLQDTKSPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1515520ESLKRT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238552.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238553.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238554.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238555.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238556.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC91e-163FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1S4BG320.0A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
TrEMBLA0A1S4C1140.0A0A1S4C114_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRINGXP_009616992.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-162FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]