PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13103g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 314aa    MW: 36244.7 Da    PI: 7.1651
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13103g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.14e-41101171107
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs+rdkky+tg+r+nrat +g+
  Niben101Scf13103g00009.1  10 VPPGFRFHPTDEELVGYYLRKKIAAQKIDL-DVIRDIDLYRIEPWDLQAkcrIGYEEQNEWYFFSHRDKKYPTGTRTNRATMAGF 93 
                               69****************************.9***************953432233667************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLv 107
                               Wkatg+dk+v++ k++l+g++ktL 
  Niben101Scf13103g00009.1  94 WKATGRDKAVYD-KSKLIGMRKTLE 117
                               ************.999*******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-427156IPR003441NAC domain
PROSITE profilePS5100543.12810156IPR003441NAC domain
PfamPF023658.3E-2011119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDTNESSSCV PPGFRFHPTD EELVGYYLRK KIAAQKIDLD VIRDIDLYRI EPWDLQAKCR  60
IGYEEQNEWY FFSHRDKKYP TGTRTNRATM AGFWKATGRD KAVYDKSKLI GMRKTLEEHP  120
MARNLTGSCM NIDSNPKKIV LRRHEEGWVV CRAFKKRNTG QAKTNINGEG WESNYFYEES  180
SGVSSVVDPL EYIPRQPPTG NFMSQNLLCK QEIEANNNST LNFLHSDQFV QLPQLESPSL  240
PLMKRPSSMS LVSENNRDED DQQITKRSKI NKNVNDRVTD WRALDKFVAY QLSHDDGVSS  300
YEPHNGSDLG MLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-341016117170NO APICAL MERISTEM PROTEIN
1ut4_B3e-341016117170NO APICAL MERISTEM PROTEIN
1ut7_A3e-341016117170NO APICAL MERISTEM PROTEIN
1ut7_B3e-341016117170NO APICAL MERISTEM PROTEIN
4dul_A3e-341016117170NAC domain-containing protein 19
4dul_B3e-341016117170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451362.10.0PREDICTED: NAC domain-containing protein 37-like
SwissprotO655081e-121NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A1S3YHE00.0A0A1S3YHE0_TOBAC; NAC domain-containing protein 37-like
STRINGXP_009761611.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-111NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]