PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13047g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 494aa    MW: 55140.9 Da    PI: 6.8268
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13047g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.2e-10200240441
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                                k  rr+++NReAA++sR+RKka++++Le+   + ++Le+e
  Niben101Scf13047g00005.1 200 AKTVRRLAQNREAAKKSRLRKKAYVQQLETsriRLAQLEQE 240
                               6788************************9733355555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-5197264IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-8199245No hitNo description
PROSITE profilePS502179.036199243IPR004827Basic-leucine zipper domain
PfamPF001703.4E-7200240IPR004827Basic-leucine zipper domain
CDDcd147083.44E-20201251No hitNo description
SuperFamilySSF579593.3E-6201243No hitNo description
PROSITE patternPS000360204219IPR004827Basic-leucine zipper domain
PfamPF141441.5E-30283355IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MESQRIGESG SLSAESGPSH HHHNMSYALF RGLNPPNTSF MYHSTTNNQE PPVFGFGELE  60
EAIALQGVKM SNDEAAKAYF AFVILCSFIC NYEQTCCNSG DVPFLAYEIP SHPKSSALNT  120
YSSRGEPHLE PESPPISGKP SSDYQSLEQN QQQLQNQQQQ LQEMASDSPR IVVSHTEPAS  180
KPNHEKRKGV GSTSDRVVDA KTVRRLAQNR EAAKKSRLRK KAYVQQLETS RIRLAQLEQE  240
LQRARSQGLF MGGGAAAGAY ISSAGAAIFD MEYSRWLDDD QRHISELRTA LQAHLGDGDL  300
RIIVDGYIAH YDEIFQLKGV AAKSDVFHLI TGMWTTPAER CFLWMGGFRP SELIKQQVVG  360
IYSLQQSSQQ AEEALSQGLE QLQQSLIETV ATASLNDGMH HMAVALGKLA NLEGFLRQAD  420
NLRQQTLHQL HRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRETRMA DDNSCQTTTE  480
LQIIQASQHH FSNM
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485808.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016485809.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016485810.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A1S4BA790.0A0A1S4BA79_TOBAC; transcription factor TGA2-like isoform X1
STRINGXP_009613713.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-155bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]