PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12410g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 233aa    MW: 26233.9 Da    PI: 5.9583
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12410g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-3981081100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lq
  Niben101Scf12410g00014.1   8 PCGACKFLRRKCVKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVTDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQ 92 
                               7*************************89********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+ +l+a+la+lke+
  Niben101Scf12410g00014.1  93 QQVVNLQAQLASLKEQ 108
                               ***********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2717109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-378106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTGSAGSPCG ACKFLRRKCV KGCVFAPYFC YEQGATHFSA IHKVFGASNV SKLLAHIPVT  60
DRGEAAVTIA YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKEQAA HQNMQNGSNY  120
TNPNYEKFQD LQSWFHQSEN SNTNIPQFES SLTSNNIGST PYYGSQENIT SNSYHMGNYE  180
NMMLPKENMS NFEEGSCSID SYDMQTDHHN RQWTFQDDAD DLQSVAFRYF QHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3521145111LOB family transfactor Ramosa2.1
5ly0_B2e-3521145111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771981.11e-169PREDICTED: LOB domain-containing protein 14-like
RefseqXP_016506434.11e-169PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SLB63e-63LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A1S4CZL51e-167A0A1S4CZL5_TOBAC; LOB domain-containing protein 14-like
TrEMBLA0A1U7W4531e-167A0A1U7W453_NICSY; LOB domain-containing protein 14-like
STRINGXP_009771981.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-55LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]