PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12405g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 418aa    MW: 48554.3 Da    PI: 6.3323
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12405g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.93.2e-2493188186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                               +Wt+q+v++Li+a+++++e+  ++           kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e+
  Niben101Scf12405g00017.1  93 KWTDQMVRLLITAVSYIGEETATEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEV 177
                               7**************999998875333345567799********************************************66999 PP

                  trihelix  76 sstcpyfdqle 86 
                               +++ ++++ l+
  Niben101Scf12405g00017.1 178 VENPALLNVLD 188
                               99999988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-2391214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADRGKS  60
ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETATEYGGR  120
RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN  180
PALLNVLDHV SEKGKEEVRK ILSSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR  240
EEHDDTDVRK HMQDDNDEDD HETDLVEDQD EYEENHSLPR EHRLHGMSGG FSKRIKQCQG  300
HETVTFGNSL TTVDGNRTFA SQPQKANTDA NQMFSECNKA DILQKQWMDH RSFQLEEQKL  360
QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMTLELKR KEMLAENV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235880.10.0PREDICTED: uncharacterized protein LOC109216202 isoform X1
TrEMBLA0A1J6K3J00.0A0A1J6K3J0_NICAT; Uncharacterized protein
STRINGXP_009799706.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-147sequence-specific DNA binding transcription factors