PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12127g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 448aa    MW: 50596.4 Da    PI: 5.9723
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12127g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.27.8e-22125221185
                  trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                               +Wt++ v++Li+++  ++++ + +g           +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++
  Niben101Scf12127g00002.1 125 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgciQKKGKWKTVSRIMMSNGCRVSPQQCEDKFNDLNKRYKKLNDILGRGtSC 209
                               7**************777777632224555667889**********************************************568 PP

                  trihelix  74 essstcpyfdql 85 
                                ++++ ++ d++
  Niben101Scf12127g00002.1 210 AVVENPALMDSM 221
                               999988888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-18123248No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNSSGMSGGF LSGYNGGFLG MNRLQQPQLN SNNAVHGHQT NHNNVQSSMS TKLGLENDKQ  60
IDLMDVKSCM PFGKDKAVGP SNVVNSSNHN NNTSDEDEPS FTEDGIGDNN GGALGKKGSP  120
WQRMKWTDNV VRLLIQVVAC VGDDGSLEGT EGLKRKSGCI QKKGKWKTVS RIMMSNGCRV  180
SPQQCEDKFN DLNKRYKKLN DILGRGTSCA VVENPALMDS MPQLSAKAKD TVKKILNSKH  240
LFYREMCAYH NGQKIPDWND LEFPVHSSPA AAQCAKDNNG SQGDEAEENN ESDDESNDEE  300
DNHGVDERMG RVEENGNFLP HTSGNDNFIA EINEFFQDPT KSKWEQKMWI KKRMLQLEEE  360
KIGIQAEALE LEKRQFKWQR FCWKKDRELE IERLENEKLI LENEHMSLQL KHKELEIDSK  420
KPNISFSSAP LSIDRPRGRD QIDAARYH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768464.10.0PREDICTED: uncharacterized protein LOC104219473
TrEMBLA0A1U7W1F40.0A0A1U7W1F4_NICSY; uncharacterized protein LOC104219473
STRINGXP_009768464.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-70