PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11999g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 199aa    MW: 21719.6 Da    PI: 5.8005
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11999g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.2e-302104198
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlrr+C+++C+l+ ++     p +q +++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++
  Niben101Scf11999g00010.1   2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLL 86 
                               6*************************99********************************************************* PP

                    DUF260  81 lklqqqleqlkaelallk 98 
                               ++++++++q+++e++l++
  Niben101Scf11999g00010.1  87 SRGNWHVCQKAVETVLVG 104
                               ************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.3151107IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR  60
PALFKSLLFE ACGRTVNPVT GAVGLLSRGN WHVCQKAVET VLVGGNLQPV FAGILTPTPY  120
MDETFESFRC GGAWDIPNQF SNKSGSFIDG SDHTDTTEWV GLEKRWNTTS SIGSETELSD  180
VSLGLDSGNK EPKLLNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224836.11e-141PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SN237e-54LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A314KWD11e-140A0A314KWD1_NICAT; Lob domain-containing protein 38
STRINGXP_009783238.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-56LOB domain-containing protein 38