PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11756g01019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 189aa    MW: 21462.4 Da    PI: 5.0781
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11756g01019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-09158186134
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 
                               s+y+GV++++++grW+++I+d      + k+++lg
  Niben101Scf11756g01019.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLG 186
                               78*******************......55****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.689159189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMLDLNLSVI YDEKVPEGSV VDESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDI  60
LKVGGAETSR SCSNNDDDQE GYNENQRATR SEFVTRQLFP VDASHTSRKP DWVDLSFDPP  120
NTLSFQEAEI VRAQQQQQQQ RQPQQIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGMWI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784819.11e-105PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_009784820.11e-106PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_009784821.11e-106PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X3
RefseqXP_016501408.11e-105PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_016501409.11e-106PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_016501410.11e-106PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X3
SwissprotQ9SK036e-31RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4CJK41e-105A0A1S4CJK4_TOBAC; AP2-like ethylene-responsive transcription factor TOE3 isoform X3
TrEMBLA0A1S4CJN71e-104A0A1S4CJN7_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A1S4CKH01e-104A0A1S4CKH0_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A1U7X5531e-105A0A1U7X553_NICSY; AP2-like ethylene-responsive transcription factor TOE3 isoform X3
TrEMBLA0A1U7XCZ61e-104A0A1U7XCZ6_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A1U7XED61e-104A0A1U7XED6_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009784819.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-28related to AP2.7