PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11552g02001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 304aa    MW: 34464 Da    PI: 9.0799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11552g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.12.2e-33622021128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                               lp+G++F+P+d+e++ e+L++kv +++      +   +     i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk
  Niben101Scf11552g02001.1  62 LPAGVKFDPSDHEIL-EHLEAKVISDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRK 141
                               799***********9.99*****99995554443...143333666657**********.566677888**************** PP

                       NAM  75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +r+++      + +W++tgk+++v+  +g l+g kk Lv+y   gr++k+ekt+Wvmh+y+l
  Niben101Scf11552g02001.1 142 RRKVRteidggETRWHKTGKTRPVYI-GGVLKGYKKNLVLYtnYGRQRKPEKTNWVMHQYHL 202
                               **755456655778************.**************66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3756221IPR003441NAC domain
PROSITE profilePS5100532.84862221IPR003441NAC domain
PfamPF023651.9E-1463202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTWCSQSNGE TALPIISAPP SDENNIMITS KVDHEIRIIT CPSCGHSIEL QNQRGIHDLP  60
GLPAGVKFDP SDHEILEHLE AKVISDTLKL HPLIDEFILT IDGENGICYT HPEKLPGVSK  120
DGQVRHFFHR PSKAYTTGTR KRRKVRTEID GGETRWHKTG KTRPVYIGGV LKGYKKNLVL  180
YTNYGRQRKP EKTNWVMHQY HLGENEEEKD GELAVSKVFY QTQPRQCGSL SIRKPVDNKK  240
SRSLSRQDSP ILKTMNFVDY YNPPFISHDI GSQNRDSSPQ LIQNLVVHGD SSSFVIPSNA  300
RKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230486.10.0PREDICTED: NAC domain-containing protein 73-like isoform X2
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1U7Y2Q70.0A0A1U7Y2Q7_NICSY; NAC domain-containing protein 8-like
STRINGXP_009797428.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-110NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]