PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11424g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 290aa    MW: 30921.6 Da    PI: 8.2682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11424g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-202574255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAaka++ a+++++g
  Niben101Scf11424g01001.1 25 HYRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAAKAYDTAAREFRG 74
                              6********.**********965...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.62E-312582No hitNo description
Gene3DG3DSA:3.30.730.105.3E-322582IPR001471AP2/ERF domain
SMARTSM003804.1E-402588IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-222583IPR016177DNA-binding domain
PfamPF008471.7E-132574IPR001471AP2/ERF domain
PROSITE profilePS5103223.9862582IPR001471AP2/ERF domain
PRINTSPR003673.5E-112637IPR001471AP2/ERF domain
PRINTSPR003673.5E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAMKEKLNGG LKGRNVKTNG VKEVHYRGVR KRPWGRYAAE IRDPSKKSRV WLGTFDTAEE  60
AAKAYDTAAR EFRGPKAKSN FPLPSENQCP SNSSGPTESS SGETGVHAPH APSELDLTRP  120
LGTLAVGGDH GGCKSEVGLV RNGIPIFHHQ PVMGVLTSDD SGVAESSSGE TGVHAPLELD  180
LTRHLGAVGE GGNHVRNGFP VFYQQPTVAV LPNGLPILLF DSTFVPTGVW NRQKPYRFEP  240
VGVEFNGVSG RVVHSDASSS AAVKENHYGG GGVGRRELNL DLNLAPPMEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-212583261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-212583564ATERF1
3gcc_A2e-212583564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453659.11e-179PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW497e-79ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1S3YN201e-178A0A1S3YN20_TOBAC; ethylene-responsive transcription factor 4-like
STRINGXP_009769304.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-26erf domain protein 9