PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10498g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 301aa    MW: 32999.1 Da    PI: 6.8679
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10498g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.27.5e-30167223158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +ksrkpylheSRh+hAlrR+R+sgGrF
  Niben101Scf10498g01001.1 167 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKSRKPYLHESRHQHALRRARASGGRF 223
                               69************************9999.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-32165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.166166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-25168223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-23169191IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-23200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPSNAKSANR EELNVYNGPR SAVYSEPWWN SAGYNPVSPG LMRGTASDSS SLEQSMDGQS  60
QSDGGINEED DAPEKSQSIA PLHADGSYGQ ADQNFQPAAP TIPPKLDGTL TQTQQLELVG  120
HSIACAPNPY VDPYYGGMMT AFGQPLVPPH VLDMHYARMP LPHEMAQEPV YVNAKQYRRI  180
LQRRQSRAKA ELEKKQIKSR KPYLHESRHQ HALRRARASG GRFAKKTDAD ASKGTGSVSS  240
SGSEPLQFNA ADVQNRHENG RLAELQHSYS NGSSYGNQSS FQESKDEYQS AESREGDSSG  300
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-17167231266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251747.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1J6I1Z60.0A0A1J6I1Z6_NICAT; Nuclear transcription factor y subunit a-1
STRINGXP_009767513.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-57nuclear factor Y, subunit A1