PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10262g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 200aa    MW: 22034.1 Da    PI: 5.7439
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10262g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.51.3e-302101195
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+G+vg++
  Niben101Scf10262g00006.1   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPENQRPGLFQSLLYEAAGRTVNPVNGVVGLL 86 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaela 95 
                               ++++++++q+++e+ 
  Niben101Scf10262g00006.1  87 WTGSWHVCQAAVETI 101
                               **********99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8351107IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPENQR  60
PGLFQSLLYE AAGRTVNPVN GVVGLLWTGS WHVCQAAVET ILRGGTLSPI PELFGKSSEL  120
DEESECINVF KLLNHTQNTR SKMQKGRRAS DEAATEVLQL ENLDLSLLMQ GFQSEIVYSP  180
SRKSEESVTT TCFESSLGDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225598.11e-133PREDICTED: LOB domain-containing protein 37-like isoform X1
SwissprotQ9SN231e-74LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A314KT941e-132A0A314KT94_NICAT; Lob domain-containing protein 37
STRINGXP_009777174.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-77LOB domain-containing protein 38