PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09458g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 274aa    MW: 31122.5 Da    PI: 4.7048
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09458g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.5e-2790148259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s ++  + ++tY+ eHnh+
  Niben101Scf09458g00011.1  90 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTEIGTYIVTYTAEHNHS 148
                               79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-2975150IPR003657WRKY domain
PROSITE profilePS5081131.62884150IPR003657WRKY domain
SuperFamilySSF1182904.58E-2586150IPR003657WRKY domain
SMARTSM007747.8E-3289149IPR003657WRKY domain
PfamPF031063.2E-2391147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMDWGLQAVV IGSSTCNDIQ YGANYIDQKS YFSPLDFQES EYLAFSEMKT EVLSDELEEL  60
YKPFYPVVGQ NTKNEQKRVV LQLKAEDLSS DKWAWRKYGQ KPIKGSPYPR SYYRCSSSKG  120
CLARKQVEQS CTEIGTYIVT YTAEHNHSQP TRRNSLAGTI KTKFPTSDNS NKNENPKIEK  180
EKISSTHGSK SNLVLSKATL LNIESNIHES QFPEIEFPEI KINQENNMFE GSDENECVSI  240
DDMFDGDFFA GLEDIHDGFN SSFGCNNSTF PFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-18871501274WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764282.10.0PREDICTED: probable WRKY transcription factor 29
RefseqXP_016483102.10.0PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A1S4B2E50.0A0A1S4B2E5_TOBAC; probable WRKY transcription factor 29
TrEMBLA0A1U7V8120.0A0A1U7V812_NICSY; probable WRKY transcription factor 29
STRINGXP_009764282.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.16e-33WRKY family protein