PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09387g05005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 336aa    MW: 39032.7 Da    PI: 6.9367
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09387g05005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.3e-5671361129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeelv++yL+kk+++k+++l +vike+d+yk+ePwdL++  k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+
  Niben101Scf09387g05005.1   7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKEIDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGF 90 
                               69****************************.9***************954555554445************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk++++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Niben101Scf09387g05005.1  91 WKATGRDKAIYR-KHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                               ************.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-595164IPR003441NAC domain
PROSITE profilePS5100558.7387164IPR003441NAC domain
PfamPF023654.5E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNSFTHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK EIDLYKIEPW DLQELCKIGT  60
EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YRKHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTTQASILNQ KYEEGWAVCR VFKKKLATTM RREGEHESLC  180
WYNEDQVSNF MPDFESPRRF PNPYSATAYH NPMLACTNNM QQPPNDAFLQ LPQLESPKVP  240
QSYGSNMNQM VQSNSIYNNN NYDHQVVDQL TDWRVLDKFV ASQLSQEDGC SKTETSTVAC  300
SSSPASEQMN LQLQNDFKSQ EMASELASSS QVDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-52616514169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451185.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-132NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1S3YGD10.0A0A1S3YGD1_TOBAC; NAC domain-containing protein 7-like
STRINGXP_009631955.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-134NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]