PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09296g01011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 126aa    MW: 14111.6 Da    PI: 8.9658
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09296g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA35.23.9e-114273558
                 CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58
                               +pylheSRh+hA+rR+R  gGrF
  Niben101Scf09296g01011.1  4 YQPYLHESRHRHAMRRARDGGGRF 27
                              58*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115217.764130IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-9527IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MHAYQPYLHE SRHRHAMRRA RDGGGRFLNT KKKIQLPANN IINATTPSSK GKGCAASEVS  60
SMDSDFSQNY MLNSGHIGSS NTSVEGFQFQ GIHNTENPQV GCHYQWNLND NHCNCMQSRA  120
SNLQPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11120RHRHAMRRAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767410.13e-71PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
RefseqXP_009767411.13e-71PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
RefseqXP_009767412.13e-71PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
TrEMBLA0A1J6IJT83e-70A0A1J6IJT8_NICAT; Nuclear transcription factor y subunit a-7
STRINGXP_009767409.18e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-11nuclear factor Y, subunit A3