PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09109g01017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 343aa    MW: 39969 Da    PI: 5.7893
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09109g01017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.67.9e-1939121286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                               Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yf
  Niben101Scf09109g01017.1  39 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYF 117
                               ***********************************9966667766579*****************98766664......359999 PP

                  trihelix  83 dqle 86 
                               d ++
  Niben101Scf09109g01017.1 118 DLMD 121
                               9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-1938123No hitNo description
PROSITE profilePS500906.263899IPR017877Myb-like domain
SMARTSM005952.8E-546128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MASSSSSPPP PLLLPPPESI QPQPQISPSP QKKTQPLPWT HQETFNLIQA YQEKWYSLKK  60
GQLKASQWEE VAITVAARCG FDEPSKSATQ CRHKIEKLRK RYRAERLKPY PNSWQYFDLM  120
DRMERGPLPI SAHPVAMVKC QQNLNSILNP NSTAADHQRY YYDNNTDSDD VDALSYMDMR  180
KNKCKSINHI VRGEMGVTGM NVNENVNVVD NRNVNRMVKD RNFDVMRRIR NPMNEKRKGY  240
FGNVAIDDDD EDEDVEEEVD EEEDEENEGS VGGSELAAEI RGFAERFMRM ENKNIEMMKE  300
TERYRMEMEK RRMEMILENQ RNLIDTINRV VGSHKKVKVA QEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226222.10.0PREDICTED: uncharacterized protein LOC109207705
TrEMBLA0A314KTX80.0A0A314KTX8_NICAT; Uncharacterized protein
STRINGXP_009792432.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.18e-30Trihelix family protein