PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09078g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 130aa    MW: 15458.7 Da    PI: 9.5001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09078g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.14.9e-3841191128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lpp frFhPt+ee+          g+k++l e+i+evd+yk+ePwdLp k  + +++ ewyfFs+ +++y++g+r++ratk+gyW
  Niben101Scf09078g00010.1   4 LPPSFRFHPTNEEIN---------GRKIKL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPCNREYPNGSRTKRATKAGYW 78 
                               799*********976.........888888.88***************6434555777*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd++v s    ++   +tLv+y+grap+g + dWvmheyrl
  Niben101Scf09078g00010.1  79 KATGKDRKVNS----QMRAVETLVYYRGRAPHGGRIDWVMHEYRL 119
                               *********99....678899**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.451130IPR003441NAC domain
SuperFamilySSF1019415.23E-422123IPR003441NAC domain
PfamPF023651.7E-185119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVSLPPSFRF HPTNEEINGR KIKLEIIPEV DLYKCEPWDL PGKSLLPSKD LEWYFFSPCN  60
REYPNGSRTK RATKAGYWKA TGKDRKVNSQ MRAVETLVYY RGRAPHGGRI DWVMHEYRLD  120
ERELMYNLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-39211913140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774486.12e-76PREDICTED: NAC domain-containing protein 67-like, partial
RefseqXP_016490095.12e-76PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI51e-64NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A1S4BMM05e-75A0A1S4BMM0_TOBAC; NAC domain-containing protein 86-like
TrEMBLA0A1U7WB834e-75A0A1U7WB83_NICSY; NAC domain-containing protein 67-like
STRINGXP_009774486.16e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46212442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-68NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]