PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08621g01003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 418aa    MW: 44799.2 Da    PI: 7.745
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08621g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264e-391162215112
                       TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                               k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+ + s++
  Niben101Scf08621g01003.1 116 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTNPANFStLNVSLRSSGTTISAP 200
                               899***************************************************************9997777777777633333 PP

                       TCP  89 ........kaaksaakskksqksaasalnlak 112
                                                   +  a+++l +++
  Niben101Scf08621g01003.1 201 psksaplfI-----------HGGANTMLGFHH 221
                               333333331...........333333444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-36119234IPR005333Transcription factor, TCP
PROSITE profilePS5136927.598119173IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEFMEPHRKK QSGGSSTSGT DHHHHNHQHA QHQQQQQHNQ ETPSSLQLVS SHQSQPDPPT  60
PGSNQPHPHP HGPFMGSISM QSRTLISPPS TNYSSSSTTP TETPTPNNIL STKVVKKPSK  120
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GNKSDGETIE WLLQQAEPAI IAATGTGTNP  180
ANFSTLNVSL RSSGTTISAP PSKSAPLFIH GGANTMLGFH HQLSNAGFGK DPDEDNYMKK  240
RFREDTSGAT SPSGEPERPG GQAHEPGSDS KPGSSQTSSF IPAPAMWAVA PAAGNVGNAF  300
WMLPVSGGTG STTASVGVAQ PDHQLWRSRI GGFEFPVGGR FSPVQLGSMV LQQSQPVQQL  360
GLGVTETNMG MLSSMNNAYN SSGNNRVDLG MNLEQHHHHQ NQTQGSDSGD ENHKDSQL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500275.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF01e-69TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A1S4CGH40.0A0A1S4CGH4_TOBAC; transcription factor TCP23-like
STRINGXP_009775051.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.13e-59TCP family protein