PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08576g01014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 363aa    MW: 39100.6 Da    PI: 8.2497
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08576g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.37.8e-36691752108
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++  +++ +  + ++
  Niben101Scf08576g01014.1  69 TPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVKWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTTSP 153
                               6899************************************************************777773332111111111111 PP

                       TCP  86 ssgkaaksaakskksqksaasal 108
                                s ++++++++++k+++++++++
  Niben101Scf08576g01014.1 154 PS-NRENEENNPQKRRRKSSTNS 175
                               11.12222222222222222223 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2974171IPR005333Transcription factor, TCP
PROSITE profilePS5136925.17475129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSNFHDPDDE CGTSELSNGA GGDSNDKKND SNEYSDEKKV VISALKQEPF DSDHHTLVPA  60
TPIPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE  120
HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT TSPPSNRENE ENNPQKRRRK SSTNSEFIDV  180
GNLNKNVANV SQFAPVTTTP MTVAAGVAPP QGLVPVWAVS NAGVMVPSNA IWMIPGTPNN  240
NINNNNNNFM QYPQLWTITP SVTPVFNLAA TTRTISSFET ATTANINGPP PMMVAEPLST  300
GPKVGSNKSS MAPASLSSSI GDRNNNNNDV KAHKLRDFSL EIYDRKELQF MGGSGNQVTS  360
SKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225455.10.0PREDICTED: transcription factor TCP19-like
TrEMBLA0A314KV590.0A0A314KV59_NICAT; Transcription factor tcp19
STRINGXP_009800537.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137311112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-54TCP family protein