PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07883g07003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 182aa    MW: 20766.1 Da    PI: 9.3715
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07883g07003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1226.9e-3821136289
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec. 73 
                               +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++            s ss ++  
  Niben101Scf07883g07003.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpsidaadgS-SSGNNIv 104
                               79**************************************************************9999877666532.2223333 PP

                       TCP  74 .eaesssssasnsssg...............k 89 
                                e++++++++++ + +               +
  Niben101Scf07883g07003.1 105 lEQQQQQNQQQEFQLQrqleennpsgwilphH 136
                               44444444443222223343334444444430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-3421124IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPS IDAADGSSSG NNIVLEQQQQ QNQQQEFQLQ  120
RQLEENNPSG WILPHHQQTF YSQQPQGAVF PQREPLQSNS SHLIHAWEER PPISHISPAF  180
AY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783353.11e-108PREDICTED: transcription factor TCP4-like isoform X2
RefseqXP_016448735.11e-108PREDICTED: transcription factor TCP4-like isoform X2
TrEMBLM1AJX38e-63M1AJX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000243282e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-49TCP family protein