PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07829g05001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 282aa    MW: 30854.7 Da    PI: 8.8654
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07829g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1325.5e-4189216289
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pa++++tgt++++a+++  + s +ss+s+ 
  Niben101Scf07829g05001.1  89 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETVEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSM 173
                               789******************************************************************9998777777777755 PP

                       TCP  86 ssg.......................................k 89 
                               s +                                        
  Niben101Scf07829g05001.1 174 SVPsqlrssyfspnfslsqrrglfpgiglssdnsattllnfqT 216
                               5556666667777777777777777777765444444444432 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-4493263IPR005333Transcription factor, TCP
PROSITE profilePS5136927.84595149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDGGGDDHHL HQHHHHHRPI ATFPFQLLEK KEDEACSSSS NAAAAYTSLA ISNTDNTHTN  60
PSNTPRSNTS SASTLQITAS GADSSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF  120
QLTRELGHKS DGETVEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR  180
SSYFSPNFSL SQRRGLFPGI GLSSDNSATT LLNFQTNLNS SMQLQTKNEL RDNSIDLTDS  240
SAEDNLNRKR RSDLDLEQQH QQQMGSYLLQ XFNGDKCGGQ FK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492804.11e-160PREDICTED: transcription factor TCP14-like
TrEMBLA0A1S4BVA71e-159A0A1S4BVA7_TOBAC; transcription factor TCP14-like
STRINGXP_009612852.11e-156(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-38TCP family protein