PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07798g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 653aa    MW: 73345.7 Da    PI: 10.6582
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07798g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.87.7e-1543130186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ ++++pk   qCk++++ ++k+yk +k    ++  +  s++p+
  Niben101Scf07798g01002.1  43 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPF 125
                               7*************************************856666666644449********************98..56668*** PP

                  trihelix  82 fdqle 86 
                               fd+l+
  Niben101Scf07798g01002.1 126 FDKLD 130
                               ***98 PP

2trihelix46.87.7e-15347434186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ ++++pk   qCk++++ ++k+yk +k    ++  +  s++p+
  Niben101Scf07798g01002.1 347 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPF 429
                               7*************************************856666666644449********************98..56668*** PP

                  trihelix  82 fdqle 86 
                               fd+l+
  Niben101Scf07798g01002.1 430 FDKLD 434
                               ***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2541132No hitNo description
SMARTSM005950.1151137IPR006578MADF domain
PfamPF138372.5E-25345436No hitNo description
SMARTSM005950.11355441IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MSKITFKPLL LSKSVYTNQN TQPQPLRTSG GSGGGGGGGR EDCWSEGATG VLIDAWGERY  60
LELSRGNLKQ KHWKDVADIV SSREDYRKTP KTDIQCKNRI DTVKKKYKLE KSKIASGQGP  120
SKWPFFDKLD QLTGPTAKIN PTVAAIGAGP SNLYSSNQRL QVPMGIPMGV RSLPHLRPHQ  180
QLQSQQKQKQ PFRKRPHVDS DTSESESEPE LSPDSTDSFP PGTFQRKKPR IQRELMNSRA  240
MRQGTRGGSG EASGKGKNWG NSVRELTRAI LKFGEAYEQA ESAKIQQMVE MEKQRMKFAK  300
ELELQRMQFF MNTQLELSQL KNHRRQPQPL RTSGGSGGGG GGGREDCWSE GATGVLIDAW  360
GERYLELSRG NLKQKHWKDV ADIVSSREDY RKTPKTDIQC KNRIDTVKKK YKLEKSKIAS  420
GQGPSKWPFF DKLDQLTGPT AKINPTVAAI GAGPSNLYSS NQRLQVPMGI PMGVRSLPHL  480
RPHQQLQSQQ KQKQPFRKRP HVDSDTSESE SEPELSPDST DSFPPGTFQR KKPRIQRELM  540
NSRAMRQGTR GGSGEASGKG KNWGNSVREL TRAILKFGEA YEQAESAKIQ QMVEMEKQRM  600
KFAKELELQR MQFFMNTQLE LSQLKNHRRV GNSNHRGNNQ TNATANHNNS DSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227077.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG89e-96ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1J6J9B10.0A0A1J6J9B1_NICAT; Trihelix transcription factor asil2
STRINGXP_009600232.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-56sequence-specific DNA binding transcription factors