PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07105g04007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 135aa    MW: 15439.9 Da    PI: 4.8503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07105g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-201767255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +g+++AeIrd ++ng   r++lg++ taeeAa+a+++a+ +++g
  Niben101Scf07105g04007.1 17 RYRGVRKRP-WGKYAAEIRDTNKNG--VRVWLGTYATAEEAARAYDKAAFEMRG 67
                              6********.**********65676..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-141767IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-231777IPR016177DNA-binding domain
CDDcd000181.88E-281776No hitNo description
SMARTSM003803.0E-361781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-311777IPR001471AP2/ERF domain
PROSITE profilePS5103223.9731775IPR001471AP2/ERF domain
PRINTSPR003673.7E-111829IPR001471AP2/ERF domain
PRINTSPR003673.7E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MNQDNSNDNK ESREEVRYRG VRKRPWGKYA AEIRDTNKNG VRVWLGTYAT AEEAARAYDK  60
AAFEMRGRFA VLNFPHEYPS FSSSSCPLSS SSSCSSSYSS VQNVNEVKEV IEFEYLDDNL  120
LEELLGLESD KNQFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-351412011114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785394.11e-60PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016457275.11e-60PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G2X5X72e-59A0A2G2X5X7_CAPBA; Ethylene-responsive transcription factor
STRINGXP_009785394.15e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]