PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06621g02032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 213aa    MW: 24345.7 Da    PI: 7.7535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06621g02032.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-191261255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Niben101Scf06621g02032.1 12 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAVAYDEAALRFKG 61
                              8********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-221170No hitNo description
SuperFamilySSF541714.77E-221270IPR016177DNA-binding domain
PfamPF008471.3E-121261IPR001471AP2/ERF domain
PROSITE profilePS5103225.081269IPR001471AP2/ERF domain
SMARTSM003806.3E-371275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-331270IPR001471AP2/ERF domain
PRINTSPR003671.7E-111324IPR001471AP2/ERF domain
PRINTSPR003671.7E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MHICEGNSRR KRYRGVRQRP WGKWAAEIRD PKKAARVWLG TFETAEAAAV AYDEAALRFK  60
GNKAKLNFPE KVQGKFQYLT TTITSQDHHS PNNIVQQQYI PITNSNNNHP LPFQEHYPSL  120
HHYAQLLQND SNTTDLNFGT TPSYYQQSSG SGSFDFAQSS SNSTLSELPA SKLQSSYKQE  180
EEVFMRFPSH FDTSSSSCGP HESNWEEFED RKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-261172163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504834.11e-118PREDICTED: ethylene-responsive transcription factor ERF113-like isoform X1
TrEMBLA0A1S4CV081e-117A0A1S4CV08_TOBAC; ethylene-responsive transcription factor ERF113-like isoform X1
STRINGXP_009587768.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-30related to AP2 6l