PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06621g02016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 181aa    MW: 20478.4 Da    PI: 4.5385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06621g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.53e-17361051982
                  trihelix  19 erlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                               +r r+++      + +p+W +vs+++r+rg +r+p+qC+++w+n+  +++kik++e++ +  s+s + + 
  Niben101Scf06621g02016.1  36 HRGRKSSsvigsdKPEPKWNSVSSYCRQRGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSESYWIMN 105
                               4444432333333889*****************************************9755555566555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-1040104No hitNo description
SuperFamilySSF466898.21E-55286IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNENTTSLAG MVDGQQKPTE VTDDKKGKKI AEERTHRGRK SSSVIGSDKP EPKWNSVSSY  60
CRQRGANRGP VQCRKRWSNM ISDFRKIKAW ESQTNGSSES YWIMNDKVDY GIETEEEEEE  120
EENEEENTEA EAISHTDEYI MADDVMFPAM EEIGSNPLKE GTAKDKKAKS IPSPTPISDS  180
Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773262.13e-91PREDICTED: trihelix transcription factor GT-2-like
RefseqXP_016502485.13e-91PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A1S4CN588e-90A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like
TrEMBLA0A1U7VZR68e-90A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like
STRINGXP_009773262.11e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-32Trihelix family protein