PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06343g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 232aa    MW: 25978.6 Da    PI: 5.9541
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06343g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-3981081100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ ++ yeA+ar++dP+yG+v++i++lq
  Niben101Scf06343g00006.1   8 PCGACKFLRRKCVKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVTDRGEAAVTISYEAQARLQDPIYGCVSHIFALQ 92 
                               7*************************89********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+ +l+a+la+lke+
  Niben101Scf06343g00006.1  93 QQVVNLQAQLASLKEQ 108
                               ***********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1867109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-378106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTSSAGSPCG ACKFLRRKCV KGCVFAPYFC YEQGATHFSA IHKVFGASNV SKLLAHIPVT  60
DRGEAAVTIS YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKEQAA QNLQNGSNYT  120
NPNYEKFQDL QSWFHQSENS NTNMSQLDSS LTSNNIGSTP YYGSHENMTS NNYHMGNYAN  180
MVLPKENMSS FEEGSCSIDS YDMQTDHHNS QWTFQDDVDD LQSMAFRYLQ HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3521025104LOB family transfactor Ramosa2.1
5ly0_B1e-3521025104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771981.11e-168PREDICTED: LOB domain-containing protein 14-like
RefseqXP_016506434.11e-168PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9M2J78e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A1S4CZL51e-166A0A1S4CZL5_TOBAC; LOB domain-containing protein 14-like
TrEMBLA0A1U7W4531e-166A0A1U7W453_NICSY; LOB domain-containing protein 14-like
STRINGXP_009771981.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-57lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]