PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06328g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 173aa    MW: 19556.4 Da    PI: 8.2074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06328g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-203685355
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr+++ +g+++AeIrd s+++ + r++lg+f+tae+Aa a+++a+ +l+g
  Niben101Scf06328g00004.1 36 YRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEKAALAYDQAAFALHG 85
                              9*******.**********.3433.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-303495No hitNo description
PfamPF008474.5E-143585IPR001471AP2/ERF domain
PROSITE profilePS5103223.0373593IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-293593IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-233595IPR016177DNA-binding domain
SMARTSM003809.7E-343599IPR001471AP2/ERF domain
PRINTSPR003673.8E-113647IPR001471AP2/ERF domain
PRINTSPR003673.8E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MLLLNVLSEA GENSSNNNLH VNKHGTNFKE NKGANYRGVR RRPWGKYAAE IRDSTRNSVR  60
VWLGTFDTAE KAALAYDQAA FALHGTMGVL NFPVDIVYRS LMEMECRFEE GCSPVLILKK  120
MHSMKKGKSN MNKKKKEKEM NFENVLVLED LGADYLEEIL RLSEGCCDPS TSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-273296266ATERF1
3gcc_A3e-273296266ATERF1
5wx9_A1e-2634931372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764919.11e-114PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_016475341.11e-114PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-57ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S4AFC51e-112A0A1S4AFC5_TOBAC; ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U7VRB11e-112A0A1U7VRB1_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009764919.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-33ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]