PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05917g01016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 161aa    MW: 17709.2 Da    PI: 7.0008
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05917g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42e-3751051100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+k+C++apyf  eq +++fa+vhk+FGasn +kll ++p ++r++++ +l+yeA ar+rdPvyG+v++i++lq
  Niben101Scf05917g01016.1   5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANKRPETVITLCYEALARVRDPVYGSVAHIFTLQ 89 
                               7**********************99988********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+ +l+ael +++++
  Niben101Scf05917g01016.1  90 QQVLTLQAELGYVQAR 105
                               **********999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6214106IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-365103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANKRP  60
ETVITLCYEA LARVRDPVYG SVAHIFTLQQ QVLTLQAELG YVQARLSTLQ SASSEQAATY  120
SNISSLSMDT LFDTTGFHYV LDEEVENCDI HSVAVDFVSR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-342998104LOB family transfactor Ramosa2.1
5ly0_B8e-342998104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789949.11e-110PREDICTED: LOB domain-containing protein 19
RefseqXP_016441663.11e-110PREDICTED: LOB domain-containing protein 19-like
SwissprotO221326e-58LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A1S3XP111e-109A0A1S3XP11_TOBAC; LOB domain-containing protein 19-like
TrEMBLA0A1U7XST21e-109A0A1U7XST2_NICSY; LOB domain-containing protein 19
STRINGXP_009789949.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-60LOB domain-containing protein 19