PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05844g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 279aa    MW: 29753.8 Da    PI: 6.4341
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05844g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.91.9e-261992489
                       TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..................... 88
                              ++a+caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+ + s++                     
  Niben101Scf05844g00001.1  1 MPALCAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTNPANFStLNVSLRSSGTTISAPpsksaplfihggantmlgfhh 87
                              9**********************************************9997777777777733333333334444444444444444 PP

                       TCP 89 ...........k 89
                                         +
  Niben101Scf05844g00001.1 88 qlsnggfgediD 99
                              444444443330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-251126IPR005333Transcription factor, TCP
PROSITE profilePS5136920.552139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPALCAARVF QLTRELGNKS DGETIEWLLQ QAEPAIIAAT GTGTNPANFS TLNVSLRSSG  60
TTISAPPSKS APLFIHGGAN TMLGFHHQLS NGGFGEDIDE NNYMKKRFRE DTSDATSPSG  120
EKPERTVEHG HEPGSDSKPR SSQTSSFIPA PAMWAVAPGA GNVGNAFWML PVSGGTSSTT  180
ASVGVAQPDH QLWRSRIGGF EFPGGSRFSP VQLGSMVLQQ SQPVQQLGLG VRETNMGILS  240
SMNNAYNSSG NNRVDLSMNL EQHHHHQNSG DENHKDSQS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242940.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5183e-54TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1J6IIR70.0A0A1J6IIR7_NICAT; Transcription factor tcp8
STRINGXP_009775051.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-47TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]