PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05713g04012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 148aa    MW: 17026.3 Da    PI: 9.47
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05713g04012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.1e-071542534
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
                       HLH  5 hnerErrRRdriNsafeeLrellPkaskap 34
                               + +E++RR++++  ++eL +l+P+    +
  Niben101Scf05713g04012.1 15 RKSIEKNRRNQMKALYSELYSLVPHHH--H 42
                              5789*********************62..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-51242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.18E-51443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEQCNSPSAL SKADRKSIEK NRRNQMKALY SELYSLVPHH HHSRINLERM RQRKERLTVD  60
GNPSSIRSSS ERKETQPLLP HLEIYHVDSS LDVVLITRID YQFIFNDIIR MLHEESLEVG  120
ECATGYRATR ISDRLKKIVG SGHSGAGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792759.17e-76PREDICTED: uncharacterized protein LOC104239707
RefseqXP_016469681.17e-76PREDICTED: uncharacterized protein LOC107792022
TrEMBLA0A1S3ZZE12e-74A0A1S3ZZE1_TOBAC; uncharacterized protein LOC107792022
TrEMBLA0A1U7Y0J42e-74A0A1U7Y0J4_NICSY; uncharacterized protein LOC104239707
STRINGXP_009792759.13e-75(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-17bHLH family protein