PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05634g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 280aa    MW: 30716.9 Da    PI: 5.3124
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05634g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.31.5e-55391431102
                     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                               ql++fw+ q   ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa
  Niben101Scf05634g00001.1  39 QLQMFWTCQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAA 123
                               89****9888889************************************************************************ PP

                     NF-YC  83 vtrtdifdflvdivprdelk 102
                               +trtdifdflvdivprde+k
  Niben101Scf05634g00001.1 124 ITRTDIFDFLVDIVPRDEIK 143
                               *****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-3321133IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.5E-3753125IPR009072Histone-fold
PfamPF008082.2E-2061124IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDNNPHQSLT AAAAAAAAQS APYPQQTPYH HLLQQQQQQL QMFWTCQRQE IEQANDFKNH  60
QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI  120
AAAITRTDIF DFLVDIVPRD EIKDESGIVG LGPRMAGPTA SGVPYYYPPL GQPTPPGGVM  180
MGRPAPMAGV DPAAFYSQPP SQAWQWQTTE DNSYASGGSS GQGNLDGQTS DFLARIKDLV  240
SRWLGGLTAQ VQLMVMDAAC ISSLKCESTI LLPSMGTVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-5447139395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248263.11e-147PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP01e-100NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A1J6IDF01e-146A0A1J6IDF0_NICAT; Nuclear transcription factor y subunit c-1
STRINGXP_009780179.11e-144(Nicotiana sylvestris)
STRINGXP_009618952.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-101nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]