PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05552g08002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 727aa    MW: 78272.3 Da    PI: 5.1419
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05552g08002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.4e-36430525297
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaess 78 
                               +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++             
  Niben101Scf05552g08002.1 430 PPAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngtlkiP---- 510
                               6799************************************************************77777444211111110.... PP

                       TCP  79 sssasnsssgkaaksaaks 97 
                                  + ++  + ++ ++a++
  Niben101Scf05552g08002.1 511 ---TTSPATN-SEGENATK 525
                               ...1111111.11111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF017303.9E-19122267IPR002639Urease accessory protein UreF
PfamPF036341.7E-29435516IPR005333Transcription factor, TCP
PROSITE profilePS5136927.342436490IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:1905182Biological Processpositive regulation of urease activity
GO:0016151Molecular Functionnickel cation binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDFQFGLGSG PSKMEDVVEK IDDALQFEPN GSLLQWSQWQ LLDSVLPTGG FAHSFGLEAA  60
IQARPSKMED VVEKIDDALQ FEPNGSLLQW SQWQLLDSVL PTGGFAHSFG LEAAIQARLV  120
SGPEDLRTFV THLLENTGSL LLPFIYTLNA SPNVETWYKL DKILDATLTN EVGRKASISQ  180
GSALLRVAAA VFQEVPSLKT MREMSLTTGA VRFHHAPIFG LVCGLLGLNA ETSQKAYMFT  240
TMRDVVSAAT RLNLVGPLGA AVLQHQLAAS AEELSKKWMN RPVQEACQTS PLLDTVQGCH  300
EAPTTAMASL RTAEGYMVDS EWPLDNSKDG KVGLFLAFFF NMEDKQKIEP ENDEVNDSKI  360
LSADPLLGDS EEYTITAVGQ HVTDAEGVGP SQPPSRDIVP LLKEEPAEND LRGGTMSVGL  420
NMQLQKVEKP PAKRSSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIRWLL  480
ERAEPAIIEA TGTGTVPAIA VSVNGTLKIP TTSPATNSEG ENATKRRKRA ANSEFYDVHE  540
PSNFAPVAPI APQSLLPVWA VASANGLVPT TSGTTFFMVQ PPPTSTTTIA TAGPSYPPQL  600
WATPLYNIPG RPISNYVSGI SYAGVSAAEG QVSSSKSDGN VSAMAPSSSS TGVTTTTTTS  660
TATTQMLRDF SLEIYDKREL QFMHNVGSSC RSGGAKASMG SSPTSWSMGP SSLSKAAAWW  720
STAYDYY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.23e-63TCP family protein