PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05469g03009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 303aa    MW: 34620.1 Da    PI: 8.639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05469g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.5e-1424114186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                               +Wt++ + +L++   ++  +l+rg l++++W++v++ +     +  + +r+ +qCk++++ l+kryk +k+   + + + +s++p
  Niben101Scf05469g03009.1  24 CWTEEATWTLVDSWGRRYIELNRGFLRQTDWQQVADSVnalhgHTVKTRRTDIQCKNRIDTLKKRYKVEKAKIVESNGTLTSSWP 108
                               7*************************************9999888999*******************9999998888788889** PP

                  trihelix  81 yfdqle 86 
                               +f++l+
  Niben101Scf05469g03009.1 109 FFERLD 114
                               ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510298.57719121IPR006578MADF domain
PfamPF138373.2E-2222115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGEITASSTQ VTAPSRPLPF REDCWTEEAT WTLVDSWGRR YIELNRGFLR QTDWQQVADS  60
VNALHGHTVK TRRTDIQCKN RIDTLKKRYK VEKAKIVESN GTLTSSWPFF ERLDFLIGNS  120
GNKVTAVMVS PLPLPSRSPP MGVPLPSRRS TTTTAAAPMV TPVVLPQKRQ MPVFDDSYFR  180
RNYSAVAAAA AAEGGEEDYD DAEEEDMGMS EEKDGMRRLA KAIEKFGEIY ERVEEMKQRQ  240
MVELEKQRMQ FAKDLEVQRM QLFMDTQVQL QKIKHTKRSG SDERKSDRLV VANSSQRKSS  300
NDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234266.11e-178PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1J6L6W01e-177A0A1J6L6W0_NICAT; Trihelix transcription factor asil2
STRINGXP_009757835.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.16e-48sequence-specific DNA binding transcription factors