PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05229g02004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 356aa    MW: 38484.6 Da    PI: 9.248
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05229g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.8e-39581753105
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ +  + s +ss++ s+
  Niben101Scf05229g02004.1  58 PKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSSGNISR 142
                               799***************************************************************9977766666666666333 PP

                       TCP  87 sg.............kaaksaa.kskksqksaa 105
                               ++             ++++s++  + +++ + +
  Niben101Scf05229g02004.1 143 HNyltqnlshgvglfSSENSSMgLNIFPSGNVN 175
                               335555555566666333333334444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3761159IPR005333Transcription factor, TCP
PROSITE profilePS5136926.58363117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
METGHDNYGN SMRRPNFPLQ LLEKREDPIC STSVYPYPSA DASADQKPNQ EPNKKPHPKR  60
TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TKELGHKSDG ETIEWLLQQA EPSVIAATGT  120
GTIPANYSSL NISLRSSGNI SRHNYLTQNL SHGVGLFSSE NSSMGLNIFP SGNVNMNLNA  180
MLQAKQELYC DREGNNIGRK RRSENQDLLP VLQNYHMGNN YMLQTSNSGY IPANYQGQIP  240
ATTLYMMANN SSHDPNSMWT FPSTIGNSNI RGGSLTNSGL LNFMNSHPSV LGQHSGGSGG  300
GGGGGGGGRG TVVEGQMGML TAMNSLRQLG HASGSSNQHN GADDHGNNGH HVIIHN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229066.10.0PREDICTED: transcription factor TCP15-like
TrEMBLA0A314KM930.0A0A314KM93_NICAT; Transcription factor tcp15
STRINGXP_009804589.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139471214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-52TCP family protein