PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05081g01016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 213aa    MW: 22592.6 Da    PI: 9.9527
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05081g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.32.8e-3456127574
                       TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                                ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+pai+++tg+++ ++ ++  +
  Niben101Scf05081g01016.1  56 ASSNKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRHAEPAIIAATGSGTVPSGHVitT 127
                               5789*********************************************************88888555332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-2958123IPR005333Transcription factor, TCP
PROSITE profilePS5136927.19559113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGSDIVLHHN FTPPPTPSTG AVAVTGSGGT NSVSNDKNAL VVGPKKKHSL STRIAASSNK  60
DRHTKVNGRG RRVRMPALCA ARVFQLTKEL GHRTDGETIE WLLRHAEPAI IAATGSGTVP  120
SGHVITTAES LPLSRSPPSV LAPVSRTQPV SGFPVSGGIF SMTSPPSCRL DLYQPVLEFS  180
GNEYRHMPFT ALLLQPVTAD DGEKKVVGED ENK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251615.11e-145PREDICTED: transcription factor TCP11
SwissprotQ9SJK79e-39TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A1J6IUH01e-144A0A1J6IUH0_NICAT; Transcription factor tcp11
STRINGXP_009794398.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.11e-40TCP family protein