PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04499g02006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 349aa    MW: 39197.1 Da    PI: 8.302
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04499g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix539.1e-1723105272
                  trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                               Wt +e+++Liea++ ++er  +++              + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ +
  Niben101Scf04499g02006.1  23 WTVEETMVLIEAKKMDDERRMKRQgegtsteirgnkPGELRWKWVEDYCWKMGCLRSQNQCNDKWDNLMRDFKKVREYERRVA 105
                               *************977776665433455556666558899**************************************99864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1661591IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-41792IPR009057Homeodomain-like
PfamPF138372.6E-1322102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDRVVGNQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGEGT STEIRGNKPG  60
ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNSNNQGII  120
IKSYWKIERS ERKEKNLPTN MLPEIYEALV QVVDRKCTQK MLVGGGGGGT FAAAVSLNQS  180
TSLINSLSPT LQQQSFQAQI AALPLPPPPP TLSPPAVVVQ QSAQPPSLPY TQPFPAVDPD  240
RSEHSDSPAK RRRKGEGEGT SSGNNNNLQE VGSAIFKSAA IIAETIQASE EREERRHREL  300
LSLHERTLQI EESKAEINRQ GINGLVDSIN RLANSILSLA SEDFRMVGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614094.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A1S4CKL30.0A0A1S4CKL3_TOBAC; trihelix transcription factor ASR3-like
STRINGXP_009614093.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-66Trihelix family protein