PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04456g01013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 299aa    MW: 34274.4 Da    PI: 8.6367
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04456g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.26e-1565149286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               W+++e+  L+ea  ++  r +r++l+   W+ev++k+ +  ++er+ +qC+++++ l+k+ykk+k    ++   ++s+++yf+++
  Niben101Scf04456g01013.1  65 WSEHETFILLEAWGDRFVRHGRKSLRSDEWQEVAEKVsQGSKLERTDTQCRNRLDTLKKKYKKEKMKFAEN-GINTSKWVYFKKM 148
                               *************************************555689**********************999986.566679******* PP

                  trihelix  86 e 86 
                               +
  Niben101Scf04456g01013.1 149 D 149
                               8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.36563122IPR017877Myb-like domain
PfamPF138374.6E-2164151No hitNo description
Gene3DG3DSA:1.10.10.602.8E-564130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYENRLRIQD RIAQWISAFD FGSKRSWVRL PLWSEDFAPR VPPPSTAAAT APKPSFGGRN  60
PLSDWSEHET FILLEAWGDR FVRHGRKSLR SDEWQEVAEK VSQGSKLERT DTQCRNRLDT  120
LKKKYKKEKM KFAENGINTS KWVYFKKMDM LLTSTPQQAG ISCGVDSGEY VFMSPKVYLN  180
RANGLDEMRD SPANSGSADG DDDDSEDLPP KRSRNGQSGG SGASFKLIAD SIHKFSEIYV  240
KIENSKRQQM LELEKMRMDF HRDLEMQKRQ IVERAHAEIA RIRQGRDEEN DISAENVSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609888.11e-179PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1U7W4A71e-171A0A1U7W4A7_NICSY; uncharacterized protein LOC104223665
STRINGXP_009609888.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-68Trihelix family protein