PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04182g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 202aa    MW: 22313.2 Da    PI: 4.5165
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04182g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.7e-3781081100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aC++lrr+C+++C++apyf+ eq + +fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+
  Niben101Scf04182g00009.1   8 SCGACRFLRRRCSNECIFAPYFCYEQaTTHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFALE 92 
                               6***********************99779******************************************************** PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+++l +e++ + ++
  Niben101Scf04182g00009.1  93 QQVASLVEEIEITANQ 108
                               *********9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3197109IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-358105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAGPASSSCG ACRFLRRRCS NECIFAPYFC YEQATTHFAA VHKVFGASNV SKLLLHLPLH  60
CRSEAAVTMS YEALARMQDP IYGCVGHIFA LEQQVASLVE EIEITANQMA FYAGVVPMNT  120
INTLQFSLEC NNMNMGNNHV NHGITSLAQV NDTSANEAFI TQMNAELPEI NGFDNLFSST  180
FFDFDISDIV FEGQDLIWTT SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3351138115LOB family transfactor Ramosa2.1
5ly0_B6e-3351138115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757428.11e-138PREDICTED: LOB domain-containing protein 33-like
RefseqXP_016488257.11e-138PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS87e-52LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1S4BHD41e-136A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like
TrEMBLA0A1U7UT891e-136A0A1U7UT89_NICSY; LOB domain-containing protein 33-like
STRINGXP_009757428.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-54LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]