PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04117g10020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 322aa    MW: 34600.1 Da    PI: 8.4797
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04117g10020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.94.3e-3939165589
                       TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                               k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++  ++s +ss+ + s++
  Niben101Scf04117g10020.1  39 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSVRSSGTTISAP 123
                               899***************************************************************9996666666666633333 PP

                       TCP  89 .........................................k 89 
                                                                        +
  Niben101Scf04117g10020.1 124 psksaplfihggattmlgfhhqlsstgygqdpdenymkkryR 165
                               444555666666666666655555555554433333333320 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.0714296IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-3742189IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFREPNSKN QGGSTSRSDN QNNNNDNNNN LIISTKVVKK PSKDRHTKVD GRGRRIRMPA  60
LCAARVFQLT KELGHKSEGE TIEWLLQQAE PSIIAATGTG TIPANFSTLN VSVRSSGTTI  120
SAPPSKSAPL FIHGGATTML GFHHQLSSTG YGQDPDENYM KKRYREDTSG ATSPSSAAKP  180
ERTGGQAHEP DQESKPVSSH ASSYISAPAM WAVAPAAGNV GNTFWMVPST SSTMQRIGGF  240
ELSGGSRFNP VQLGSMFLQQ PQPVQQLGLG VSETNLGMLA SMNAYNSRGT GIDLGMNLEQ  300
HQHHNQQQGS DSGDENQKDS QS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803421.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5189e-69TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1U7YN570.0A0A1U7YN57_NICSY; transcription factor TCP8-like
STRINGXP_009803421.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-55TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]