PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04011g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 372aa    MW: 42128.1 Da    PI: 5.5004
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04011g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-1187123440
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                               +k+ rr+++NReAAr+sR+RKka++++Le+   +L +
  Niben101Scf04011g00006.1  87 DKVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLLQ 123
                               7999*************************84433333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-484147IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.79586130IPR004827Basic-leucine zipper domain
PfamPF001709.3E-887123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-688129No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-790133No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
PfamPF141444.8E-28175249IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNSTYTQFVT SKRMGICDPI HQIGMWGDFK ASSYPDTSAT LILEVENCLE NEMPIMEKRL  60
HNEIEELSHG TVGTSNRYEP EARKPIDKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LLQLEEELER TRKQGLYAGG SLDESQIGYN GTANSGIAAF EMEYIFWVEE QDRQTDELRS  180
ALNSQVGEIE LHLLVESCLN HYFDLFRMKA TAAHADVLFL MTGTWKTSAE RFFLWIAGFR  240
PSELLKVLTP NVEPLTEQQL REVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGTLGEG  300
IILPQMAATI EKLEALVRFV NQADHLRQET LLQMSCILTP QQSAQGLLAL GEYFKRLRAL  360
SSLWTSRTSE PA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779143.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
RefseqXP_009779144.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
RefseqXP_016510412.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
RefseqXP_016510413.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A1S4DAL70.0A0A1S4DAL7_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A-like
TrEMBLA0A1U7WKQ10.0A0A1U7WKQ1_NICSY; TGACG-sequence-specific DNA-binding protein TGA-1A-like
STRINGXP_009779143.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-146bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]