PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03969g06008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 312aa    MW: 35798.3 Da    PI: 8.2009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03969g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.6e-1710102286
                  trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                               Wt qe+++Liea++ ++er +r++          + +W++v +++++  + rs++qC++kw+nl +++kk++e e+++++++ ++
  Niben101Scf03969g06008.1  10 WTVQETMVLIEAKKMDDERRNRRQgdinergkPTELRWKWVEDYCWRNSCLRSQNQCNDKWDNLMRDFKKVREYERREAEKAAEE 94 
                               **************999999975333334433999*******************************************9999999 PP

                  trihelix  79 cpyfdqle 86 
                               ++ + ++e
  Niben101Scf03969g06008.1  95 IRSYWKIE 102
                               99999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.097274IPR017877Myb-like domain
PfamPF138375.7E-11988No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MLRDYRKGNW TVQETMVLIE AKKMDDERRN RRQGDINERG KPTELRWKWV EDYCWRNSCL  60
RSQNQCNDKW DNLMRDFKKV REYERREAEK AAEEIRSYWK IEKNERKEKS LPTNMLPEIY  120
EALVEVVDRK SQKMLPASLP PTLQQQSTQP QITPLPLPPL PLPPPTTVVA QTAAHHQLSD  180
GAYTSQYPFP TMCDSSDPDT SDQRSDSPAK KRRMSGEGTI SGTAKGNINN SSQEVGSAIS  240
KSAAIIAEAI HSCEEREERR HRELLTLHER RLQIEESKAE INREGINGLV DSINKLANFI  300
LALAGNKNQS AP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777500.10.0PREDICTED: uncharacterized protein LOC104227066
RefseqXP_016433408.10.0PREDICTED: uncharacterized protein LOC107759919
TrEMBLA0A1S3X1420.0A0A1S3X142_TOBAC; uncharacterized protein LOC107759919
TrEMBLA0A1U7WTE50.0A0A1U7WTE5_NICSY; uncharacterized protein LOC104227066
STRINGXP_009777500.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-50Trihelix family protein