PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03949g02007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 340aa    MW: 38817.1 Da    PI: 8.0468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03949g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5381371129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePwdL++k+k     ++ewyfFs++d+ky+tg+r+nrat++g+
  Niben101Scf03949g02007.1   8 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-EVIREVDLNKIEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGF 91 
                               69****************************.99**************964444222455************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  Niben101Scf03949g02007.1  92 WKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                               ***********9.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-605159IPR003441NAC domain
PROSITE profilePS5100558.2528159IPR003441NAC domain
PfamPF023656.3E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMEVI REVDLNKIEP WDLQEKCKIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDAD DPQGNQSDDG WVICRVFKKK HLFKVGNEGS GAASSDQLNS  180
TSSHQSRAFN TQYLLQQQQQ QGGHGLNYSH IPLALPQYNS HLQLQPQNFI PNKPLGYHDF  240
SALPTSDHQA PLMVKQLMSS ADSGYSEQNL PYQQEVGSSC DHQNLNEWKM IASSHGQLGQ  300
EDDDSAKNAG VRFDDANASS MSQINQLSHR GEMDFWGYTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-53816017166NO APICAL MERISTEM PROTEIN
1ut4_B1e-53816017166NO APICAL MERISTEM PROTEIN
1ut7_A1e-53816017166NO APICAL MERISTEM PROTEIN
1ut7_B1e-53816017166NO APICAL MERISTEM PROTEIN
4dul_A1e-53816017166NAC domain-containing protein 19
4dul_B1e-53816017166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602081.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-130BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A1S3X3A60.0A0A1S3X3A6_TOBAC; protein BEARSKIN2-like
STRINGXP_009602081.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-130NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]