PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03868g01013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 246aa    MW: 27520.4 Da    PI: 7.1664
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03868g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927e-294106198
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C l+p++     p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++
  Niben101Scf03868g01013.1   4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLM 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallk 98 
                                ++++  +q+++e +l +
  Niben101Scf03868g01013.1  89 CSGNWTRCQEAVESVLKG 106
                               **********99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1433109IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH  60
LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSTII QVPINKDNNT  120
DNQESLQIMP LKGCDIRHIS KNNSTDHIHQ VVKTRNRFKR KAKVETTASE YMINEPGPLK  180
FSITGWDFDH HMEEEDELKR APSHDSFSVE TVEPSLVNRV ETVLPVKLEE DGDVGLELTL  240
GLLSPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777707.11e-177PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8862e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1U7WCJ61e-176A0A1U7WCJ6_NICSY; LOB domain-containing protein 40-like
STRINGXP_009777707.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-73LOB domain-containing protein 41