PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03853g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 257aa    MW: 29526.4 Da    PI: 5.4139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03853g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.3e-5571311129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL+   ++e+++wyfFs++dkky+tg+r+nrat++g+Wka
  Niben101Scf03853g00002.1   7 VPPGFRFHPTDEELVDYYLRKKITSRRIDL-DVIKDVDLYKIEPWDLQ--GTEEQDDWYFFSHKDKKYPTGTRTNRATAAGFWKA 88 
                               69****************************.9***************8..335678***************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tg+dk+v+s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Niben101Scf03853g00002.1  89 TGRDKAVYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 131
                               *********.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-565135IPR003441NAC domain
PROSITE profilePS5100553.2657153IPR003441NAC domain
PfamPF023652.7E-298130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRIDLDVIK DVDLYKIEPW DLQGTEEQDD  60
WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKAVYSKHD LIGMRKTLVF YKGRAPNGQK  120
SDWIMHEYRL ETDPNGAPQA RRRMGGMPSV QEENSNNEER NSMPVFAINI NNQVHQYGNN  180
NNISTNTNEL VGDDQVTDWR VLDKFVASQL SQEEVSKEND YSNTLQGAAD DSNLNKQEAA  240
TENTSTASSS SQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-48713015140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366163.11e-120PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX23e-90NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A3Q7GAJ01e-113A0A3Q7GAJ0_SOLLC; Uncharacterized protein
STRINGSolyc03g083880.2.11e-114(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.19e-81NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]