PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03660g02005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 266aa    MW: 28869.9 Da    PI: 8.4415
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03660g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20143177135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Niben101Scf03660g02005.1 143 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 177
                               ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89137173IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-19137189IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13140178No hitNo description
Gene3DG3DSA:3.30.50.103.8E-17141177IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.95E-13142174No hitNo description
PROSITE patternPS003440143168IPR000679Zinc finger, GATA-type
PfamPF003206.2E-18143177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMHRCSNSCN GSIVGPCSCG LFHSQSNATT TTSSAFSMLF SHNPCAFDHE YSENMYSFAP  60
SSSSVDCTLS LGTPSTRLTN DISEKRVFQS HERRSSYMSN FCWGILQPKQ HTPSPPSSAH  120
KSTRGGSNGS NTNSTDPLVA RRCANCDTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAS  180
AAAATANGGR GGGGGGMDAQ QMINSTASWV HHSQPPKMPC FSSAAYGNEF RFIEDDHRDS  240
DATAIPFLPW RLNVADRPSL VHDFTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195GGRGGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500814.11e-179PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC793e-56GAT18_ARATH; GATA transcription factor 18
TrEMBLM0ZVG91e-103M0ZVG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000090311e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.18e-49GATA family protein