PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03660g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 79aa    MW: 8911.97 Da    PI: 8.8937
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03660g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-10852344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WT+ E +++ +a + + ++   +W  Ia+++g g++  ++k ++
  Niben101Scf03660g01001.1  8 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVGGGKSVDDVKQHY 52
                              7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.635460IPR017884SANT domain
SMARTSM007175.4E-8558IPR001005SANT/Myb domain
PfamPF002497.0E-9852IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-13863IPR009057Homeodomain-like
CDDcd001671.73E-7852No hitNo description
Gene3DG3DSA:1.10.10.604.9E-6853IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GGKSVDDVKQ HYAILIEDLK  60
HIESGDVPFP KYRSGGNTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-28179181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786616.14e-53PREDICTED: protein RADIALIS-like 1
RefseqXP_016513252.14e-53PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1731e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4DIR19e-52A0A1S4DIR1_TOBAC; protein RADIALIS-like 1
TrEMBLA0A1U7XAD39e-52A0A1U7XAD3_NICSY; protein RADIALIS-like 1
STRINGXP_009786616.12e-52(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-31RAD-like 6