PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03548g02003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 254aa    MW: 28910.1 Da    PI: 4.8587
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03548g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.11.2e-2333126185
                  trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                               rWt+qe+l+Lie+++  eer  rg+         + +p+W +vs+++r++g +r+p+qC+++w+n+  +++kik++e++ +  s+
  Niben101Scf03548g02003.1  33 RWTRQETLVLIEGKKIAEERTHRGRksssvfgsdKPEPKWNSVSSYCRQHGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSE 117
                               8**************999999887555677777799******************************************9866666 PP

                  trihelix  77 stcpyfdql 85 
                               s + + ++l
  Niben101Scf03548g02003.1 118 SYWIMSNDL 126
                               777766666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2822699IPR017877Myb-like domain
SuperFamilySSF466898.58E-531104IPR009057Homeodomain-like
PfamPF138374.9E-1332122No hitNo description
Gene3DG3DSA:1.10.10.601.4E-632100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNENTTSLPD LVDGQQKPTE DTDDKSNTPR HSRWTRQETL VLIEGKKIAE ERTHRGRKSS  60
SVFGSDKPEP KWNSVSSYCR QHGANRGPVQ CRKRWSNMIS DFRKIKAWES QTNGSSESYW  120
IMSNDLRREK KLPGFFDREV YDVLDGKEFT ADAYQLALVT ITTDDKVDYG IETAEEEEEE  180
EDEQENTEAE AVSHTDGYIM SEDVMFPAME EIGSNPLKEG IAKDKKAKSI PSPTPISGKL  240
RCPSKLALLY TRTC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773262.11e-156PREDICTED: trihelix transcription factor GT-2-like
RefseqXP_016502485.11e-156PREDICTED: trihelix transcription factor ASR3-like
RefseqXP_016504881.11e-156PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-58ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1S4CN581e-154A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like
TrEMBLA0A1S4CUT01e-154A0A1S4CUT0_TOBAC; trihelix transcription factor ASR3-like
TrEMBLA0A1U7VZR61e-154A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like
STRINGXP_009773262.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-60Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]