PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03518g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 208aa    MW: 22687.6 Da    PI: 8.4015
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03518g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.79.5e-39271271100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+y+A ar+rdP+yG+v++i++lq
  Niben101Scf03518g00007.1  27 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYQALARIRDPIYGCVAHIFTLQ 111
                               7***********************9989********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+ +l+aela+++++
  Niben101Scf03518g00007.1 112 QQVVNLQAELAYVQAR 127
                               ************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.58326128IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3727125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNGGSCGGAD RQYNNNNNVV GAGGGGPCGA CKFLRRKCVR GCIFAPYFDS DQGTAHFAAV  60
HKVFGASNAS KLLLRIPAHK RLDAVVTLCY QALARIRDPI YGCVAHIFTL QQQVVNLQAE  120
LAYVQARLST LQPRSPNTLT GLQSSSDIFC TASTISSSSN NMEYPQFDIT AGLSDSFDDQ  180
ERENFELHTL ARELVFRHLP GVRFRPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-37231217104LOB family transfactor Ramosa2.1
5ly0_B5e-37231217104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803301.11e-126PREDICTED: LOB domain-containing protein 19-like
SwissprotO813221e-65LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1U7YMT41e-125A0A1U7YMT4_NICSY; LOB domain-containing protein 19-like
STRINGXP_009803301.11e-126(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.19e-66LOB domain-containing protein 31