PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03488g08010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 281aa    MW: 30729.1 Da    PI: 7.0994
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03488g08010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.91.7e-2642113155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGse.................kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kprlrWt eLHerFv+av+qLGG++                 +AtPkti+++m+vkgLtl+h+kSHLQkYRl
  Niben101Scf03488g08010.1  42 KPRLRWTAELHERFVDAVTQLGGPDskgddtmltvdfllhfaEATPKTIMKAMGVKGLTLYHLKSHLQKYRL 113
                               79*********************97444444444444444446****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-3039114IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1441115IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-74267IPR006447Myb domain, plants
PfamPF002498.8E-844112IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.2E-1083114IPR006447Myb domain, plants
PfamPF143798.5E-12146171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKMYSALPFG MEGNSIGGGS GGVGEYQNML GDACLVLTAD HKPRLRWTAE LHERFVDAVT  60
QLGGPDSKGD DTMLTVDFLL HFAEATPKTI MKAMGVKGLT LYHLKSHLQK YRLGKQSKEA  120
AENYKDESQD TGSSASGSSK VVTQDVQRHV QLRIEAQGKY LQTILEKACK ALNYKAMASP  180
DLDTAREQLS ELAIKVESDC DGIVTVPSLP EVVTSFENKN APNMPARIGD CLIDVCFPSN  240
RSLVSPTSIS ALKKRPRAFA NADALPVENN MRQVQWMMTN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1642115157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1642115157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1642115157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1642115157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1642115258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257409.11e-175PREDICTED: protein PHR1-LIKE 3-like isoform X4
SwissprotQ8LAJ75e-73PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A1S3ZSK41e-173A0A1S3ZSK4_TOBAC; myb family transcription factor APL-like isoform X4
TrEMBLA0A1U7XX931e-173A0A1U7XX93_NICSY; myb family transcription factor APL-like isoform X4
STRINGXP_009794233.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-71G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]