PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03441g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 193aa    MW: 21887.8 Da    PI: 7.3374
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03441g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.95.6e-4126124199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+
  Niben101Scf03441g00006.1  26 SCAGCKFLKRRCTPHCQFAPYFRSDEPKKFANVHKVFGASNVSKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQR 110
                               6************************************************************************************ PP

                    DUF260  86 qleqlkaelallke 99 
                               +  +l+++l l+++
  Niben101Scf03441g00006.1 111 KTVELQHDLMLART 124
                               ********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.10425126IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-4026123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKSQNRIKVN FEEKGMKSNE PRSSSSCAGC KFLKRRCTPH CQFAPYFRSD EPKKFANVHK  60
VFGASNVSKI LNEVPEDQRE DTVNSLVYEA EVRLRDPVYG CIGAIASLQR KTVELQHDLM  120
LARTRLAYFA AKQNPTTNCS LMLDYDPFNV ANMMPSDFVD VPVTAGYLDS YVQNSFDMDH  180
CASTNEFGQF PFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-46211306115LOB family transfactor Ramosa2.1
5ly0_B4e-46211306115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497209.11e-133PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL81e-59LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1S4C8C51e-131A0A1S4C8C5_TOBAC; LOB domain-containing protein 21-like
STRINGXP_009630248.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.15e-62LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]